Automatic Speech Recognition with Transformer

import re
import os

os.environ["KERAS_BACKEND"] = "tensorflow"

from glob import glob
import tensorflow as tf
import keras
from keras import layers

pattern_wav_name = re.compile(r'([^/\\\.]+)')

class TokenEmbedding(layers.Layer):
    def __init__(self, num_vocab=1000, maxlen=100, num_hid=64):
        super().__init__()
        self.emb = keras.layers.Embedding(num_vocab, num_hid)
        self.pos_emb = layers.Embedding(input_dim=maxlen, output_dim=num_hid)

    def call(self, x):
        maxlen = tf.shape(x)[-1]
        x = self.emb(x)
        positions = tf.range(start=0, limit=maxlen, delta=1)
        positions = self.pos_emb(positions)
        return x + positions


class SpeechFeatureEmbedding(layers.Layer):
    def __init__(self, num_hid=64, maxlen=100):
        super().__init__()
        self.conv1 = keras.layers.Conv1D(
            num_hid, 11, strides=2, padding="same", activation="relu"
        )
        self.conv2 = keras.layers.Conv1D(
            num_hid, 11, strides=2, padding="same", activation="relu"
        )
        self.conv3 = keras.layers.Conv1D(
            num_hid, 11, strides=2, padding="same", activation="relu"
        )

    def call(self, x):
        x = self.conv1(x)
        x = self.conv2(x)
        return self.conv3(x)

class TransformerEncoder(layers.Layer):
    def __init__(self, embed_dim, num_heads, feed_forward_dim, rate=0.1):
        super().__init__()
        self.att = layers.MultiHeadAttention(num_heads=num_heads, key_dim=embed_dim)
        self.ffn = keras.Sequential(
            [
                layers.Dense(feed_forward_dim, activation="relu"),
                layers.Dense(embed_dim),
            ]
        )
        self.layernorm1 = layers.LayerNormalization(epsilon=1e-6)
        self.layernorm2 = layers.LayerNormalization(epsilon=1e-6)
        self.dropout1 = layers.Dropout(rate)
        self.dropout2 = layers.Dropout(rate)

    def call(self, inputs, training=False):
        attn_output = self.att(inputs, inputs)
        attn_output = self.dropout1(attn_output, training=training)
        out1 = self.layernorm1(inputs + attn_output)
        ffn_output = self.ffn(out1)
        ffn_output = self.dropout2(ffn_output, training=training)
        return self.layernorm2(out1 + ffn_output)

class TransformerDecoder(layers.Layer):
    def __init__(self, embed_dim, num_heads, feed_forward_dim, dropout_rate=0.1):
        super().__init__()
        self.layernorm1 = layers.LayerNormalization(epsilon=1e-6)
        self.layernorm2 = layers.LayerNormalization(epsilon=1e-6)
        self.layernorm3 = layers.LayerNormalization(epsilon=1e-6)
        self.self_att = layers.MultiHeadAttention(
            num_heads=num_heads, key_dim=embed_dim
        )
        self.enc_att = layers.MultiHeadAttention(num_heads=num_heads, key_dim=embed_dim)
        self.self_dropout = layers.Dropout(0.5)
        self.enc_dropout = layers.Dropout(0.1)
        self.ffn_dropout = layers.Dropout(0.1)
        self.ffn = keras.Sequential(
            [
                layers.Dense(feed_forward_dim, activation="relu"),
                layers.Dense(embed_dim),
            ]
        )

    def causal_attention_mask(self, batch_size, n_dest, n_src, dtype):
        """Masks the upper half of the dot product matrix in self attention.

        This prevents flow of information from future tokens to current token.
        1's in the lower triangle, counting from the lower right corner.
        """
        i = tf.range(n_dest)[:, None]
        j = tf.range(n_src)
        m = i >= j - n_src + n_dest
        mask = tf.cast(m, dtype)
        mask = tf.reshape(mask, [1, n_dest, n_src])
        mult = tf.concat(
            [tf.expand_dims(batch_size, -1), tf.constant([1, 1], dtype=tf.int32)], 0
        )
        return tf.tile(mask, mult)

    def call(self, enc_out, target):
        input_shape = tf.shape(target)
        batch_size = input_shape[0]
        seq_len = input_shape[1]
        causal_mask = self.causal_attention_mask(batch_size, seq_len, seq_len, tf.bool)
        target_att = self.self_att(target, target, attention_mask=causal_mask)
        target_norm = self.layernorm1(target + self.self_dropout(target_att))
        enc_out = self.enc_att(target_norm, enc_out)
        enc_out_norm = self.layernorm2(self.enc_dropout(enc_out) + target_norm)
        ffn_out = self.ffn(enc_out_norm)
        ffn_out_norm = self.layernorm3(enc_out_norm + self.ffn_dropout(ffn_out))
        return ffn_out_norm

class Transformer(keras.Model):
    def __init__(
        self,
        num_hid=64,
        num_head=2,
        num_feed_forward=128,
        source_maxlen=100,
        target_maxlen=100,
        num_layers_enc=4,
        num_layers_dec=1,
        num_classes=10,
    ):
        super().__init__()
        self.loss_metric = keras.metrics.Mean(name="loss")
        self.num_layers_enc = num_layers_enc
        self.num_layers_dec = num_layers_dec
        self.target_maxlen = target_maxlen
        self.num_classes = num_classes

        self.enc_input = SpeechFeatureEmbedding(num_hid=num_hid, maxlen=source_maxlen)
        self.dec_input = TokenEmbedding(
            num_vocab=num_classes, maxlen=target_maxlen, num_hid=num_hid
        )

        self.encoder = keras.Sequential(
            [self.enc_input]
            + [
                TransformerEncoder(num_hid, num_head, num_feed_forward)
                for _ in range(num_layers_enc)
            ]
        )

        for i in range(num_layers_dec):
            setattr(
                self,
                f"dec_layer_{i}",
                TransformerDecoder(num_hid, num_head, num_feed_forward),
            )

        self.classifier = layers.Dense(num_classes)

    def decode(self, enc_out, target):
        y = self.dec_input(target)
        for i in range(self.num_layers_dec):
            y = getattr(self, f"dec_layer_{i}")(enc_out, y)
        return y

    def call(self, inputs):
        source = inputs[0]
        target = inputs[1]
        x = self.encoder(source)
        y = self.decode(x, target)
        return self.classifier(y)

    @property
    def metrics(self):
        return [self.loss_metric]

    def train_step(self, batch):
        """Processes one batch inside model.fit()."""
        source = batch["source"]
        target = batch["target"]
        dec_input = target[:, :-1]
        dec_target = target[:, 1:]
        with tf.GradientTape() as tape:
            preds = self([source, dec_input])
            one_hot = tf.one_hot(dec_target, depth=self.num_classes)
            mask = tf.math.logical_not(tf.math.equal(dec_target, 0))
            loss = model.compute_loss(None, one_hot, preds, sample_weight=mask)
        trainable_vars = self.trainable_variables
        gradients = tape.gradient(loss, trainable_vars)
        self.optimizer.apply_gradients(zip(gradients, trainable_vars))
        self.loss_metric.update_state(loss)
        return {"loss": self.loss_metric.result()}

    def test_step(self, batch):
        source = batch["source"]
        target = batch["target"]
        dec_input = target[:, :-1]
        dec_target = target[:, 1:]
        preds = self([source, dec_input])
        one_hot = tf.one_hot(dec_target, depth=self.num_classes)
        mask = tf.math.logical_not(tf.math.equal(dec_target, 0))
        loss = model.compute_loss(None, one_hot, preds, sample_weight=mask)
        self.loss_metric.update_state(loss)
        return {"loss": self.loss_metric.result()}

    def generate(self, source, target_start_token_idx):
        """Performs inference over one batch of inputs using greedy decoding."""
        bs = tf.shape(source)[0]
        enc = self.encoder(source)
        dec_input = tf.ones((bs, 1), dtype=tf.int32) * target_start_token_idx
        dec_logits = []
        for i in range(self.target_maxlen - 1):
            dec_out = self.decode(enc, dec_input)
            logits = self.classifier(dec_out)
            logits = tf.argmax(logits, axis=-1, output_type=tf.int32)
            last_logit = tf.expand_dims(logits[:, -1], axis=-1)
            dec_logits.append(last_logit)
            dec_input = tf.concat([dec_input, last_logit], axis=-1)
        return dec_input

keras.utils.get_file(
    os.path.join(os.getcwd(), "data.tar.gz"),
    "https://data.keithito.com/data/speech/LJSpeech-1.1.tar.bz2",
    extract=True,
    archive_format="tar",
    cache_dir=".",
)


saveto = "./datasets/LJSpeech-1.1"
wavs = glob("{}/**/*.wav".format(saveto), recursive=True)

id_to_text = {}
with open(os.path.join(saveto, "metadata.csv"), encoding="utf-8") as f:
    for line in f:
        id = line.strip().split("|")[0]
        text = line.strip().split("|")[2]
        id_to_text[id] = text


def get_data(wavs, id_to_text, maxlen=50):
    """returns mapping of audio paths and transcription texts"""
    data = []
    for w in wavs:
        id = pattern_wav_name.split(w)[-4]
        if len(id_to_text[id]) < maxlen:
            data.append({"audio": w, "text": id_to_text[id]})
    return data

class VectorizeChar:
    def __init__(self, max_len=50):
        self.vocab = (
            ["-", "#", "<", ">"]
            + [chr(i + 96) for i in range(1, 27)]
            + [" ", ".", ",", "?"]
        )
        self.max_len = max_len
        self.char_to_idx = {}
        for i, ch in enumerate(self.vocab):
            self.char_to_idx[ch] = i

    def __call__(self, text):
        text = text.lower()
        text = text[: self.max_len - 2]
        text = "<" + text + ">"
        pad_len = self.max_len - len(text)
        return [self.char_to_idx.get(ch, 1) for ch in text] + [0] * pad_len

    def get_vocabulary(self):
        return self.vocab


max_target_len = 200  # all transcripts in out data are < 200 characters
data = get_data(wavs, id_to_text, max_target_len)
vectorizer = VectorizeChar(max_target_len)
print("vocab size", len(vectorizer.get_vocabulary()))


def create_text_ds(data):
    texts = [_["text"] for _ in data]
    text_ds = [vectorizer(t) for t in texts]
    text_ds = tf.data.Dataset.from_tensor_slices(text_ds)
    return text_ds


def path_to_audio(path):
    # spectrogram using stft
    audio = tf.io.read_file(path)
    audio, _ = tf.audio.decode_wav(audio, 1)
    audio = tf.squeeze(audio, axis=-1)
    stfts = tf.signal.stft(audio, frame_length=200, frame_step=80, fft_length=256)
    x = tf.math.pow(tf.abs(stfts), 0.5)
    # normalisation
    means = tf.math.reduce_mean(x, 1, keepdims=True)
    stddevs = tf.math.reduce_std(x, 1, keepdims=True)
    x = (x - means) / stddevs
    audio_len = tf.shape(x)[0]
    # padding to 10 seconds
    pad_len = 2754
    paddings = tf.constant([[0, pad_len], [0, 0]])
    x = tf.pad(x, paddings, "CONSTANT")[:pad_len, :]
    return x


def create_audio_ds(data):
    flist = [_["audio"] for _ in data]
    audio_ds = tf.data.Dataset.from_tensor_slices(flist)
    audio_ds = audio_ds.map(path_to_audio, num_parallel_calls=tf.data.AUTOTUNE)
    return audio_ds


def create_tf_dataset(data, bs=4):
    audio_ds = create_audio_ds(data)
    text_ds = create_text_ds(data)
    ds = tf.data.Dataset.zip((audio_ds, text_ds))
    ds = ds.map(lambda x, y: {"source": x, "target": y})
    ds = ds.batch(bs)
    ds = ds.prefetch(tf.data.AUTOTUNE)
    return ds


split = int(len(data) * 0.99)
train_data = data[:split]
test_data = data[split:]
ds = create_tf_dataset(train_data, bs=64)
val_ds = create_tf_dataset(test_data, bs=4)

class DisplayOutputs(keras.callbacks.Callback):
    def __init__(
        self, batch, idx_to_token, target_start_token_idx=27, target_end_token_idx=28
    ):
        """Displays a batch of outputs after every epoch

        Args:
            batch: A test batch containing the keys "source" and "target"
            idx_to_token: A List containing the vocabulary tokens corresponding to their indices
            target_start_token_idx: A start token index in the target vocabulary
            target_end_token_idx: An end token index in the target vocabulary
        """
        self.batch = batch
        self.target_start_token_idx = target_start_token_idx
        self.target_end_token_idx = target_end_token_idx
        self.idx_to_char = idx_to_token

    def on_epoch_end(self, epoch, logs=None):
        if epoch % 5 != 0:
            return
        source = self.batch["source"]
        target = self.batch["target"].numpy()
        bs = tf.shape(source)[0]
        preds = self.model.generate(source, self.target_start_token_idx)
        preds = preds.numpy()
        for i in range(bs):
            target_text = "".join([self.idx_to_char[_] for _ in target[i, :]])
            prediction = ""
            for idx in preds[i, :]:
                prediction += self.idx_to_char[idx]
                if idx == self.target_end_token_idx:
                    break
            print(f"target:     {target_text.replace('-','')}")
            print(f"prediction: {prediction}\n")

class CustomSchedule(keras.optimizers.schedules.LearningRateSchedule):
    def __init__(
        self,
        init_lr=0.00001,
        lr_after_warmup=0.001,
        final_lr=0.00001,
        warmup_epochs=15,
        decay_epochs=85,
        steps_per_epoch=203,
    ):
        super().__init__()
        self.init_lr = init_lr
        self.lr_after_warmup = lr_after_warmup
        self.final_lr = final_lr
        self.warmup_epochs = warmup_epochs
        self.decay_epochs = decay_epochs
        self.steps_per_epoch = steps_per_epoch

    def calculate_lr(self, epoch):
        """linear warm up - linear decay"""
        warmup_lr = (
            self.init_lr
            + ((self.lr_after_warmup - self.init_lr) / (self.warmup_epochs - 1)) * epoch
        )
        decay_lr = tf.math.maximum(
            self.final_lr,
            self.lr_after_warmup
            - (epoch - self.warmup_epochs)
            * (self.lr_after_warmup - self.final_lr)
            / self.decay_epochs,
        )
        return tf.math.minimum(warmup_lr, decay_lr)

    def __call__(self, step):
        epoch = step // self.steps_per_epoch
        epoch = tf.cast(epoch, "float32")
        return self.calculate_lr(epoch)

batch = next(iter(val_ds))

# The vocabulary to convert predicted indices into characters
idx_to_char = vectorizer.get_vocabulary()
display_cb = DisplayOutputs(
    batch, idx_to_char, target_start_token_idx=2, target_end_token_idx=3
)  # set the arguments as per vocabulary index for '<' and '>'

model = Transformer(
    num_hid=200,
    num_head=2,
    num_feed_forward=400,
    target_maxlen=max_target_len,
    num_layers_enc=4,
    num_layers_dec=1,
    num_classes=34,
)
loss_fn = keras.losses.CategoricalCrossentropy(
    from_logits=True,
    label_smoothing=0.1,
)

learning_rate = CustomSchedule(
    init_lr=0.00001,
    lr_after_warmup=0.001,
    final_lr=0.00001,
    warmup_epochs=15,
    decay_epochs=85,
    steps_per_epoch=len(ds),
)
optimizer = keras.optimizers.Adam(learning_rate)
model.compile(optimizer=optimizer, loss=loss_fn)

history = model.fit(ds, validation_data=val_ds, callbacks=[display_cb], epochs=1)

target:     <as they sat in the car, frazier asked oswald where his lunch was>
prediction: <as they sat in the car frazier his lunch ware mis lunch was>

target:     <under the entry for may one, nineteen sixty,>
prediction: <under the introus for may monee, nin the sixty,>